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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_28850608_28851827_R

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
28850608 - 28851827
Intron Length:
1220

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGAAAG
5'SS Class:
strong_major
3'SS Sequence:
GTCATGGAAACAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TATTCTCTCATT
Flanking Amino Acid:
AQSQHHQQFLDASRVLPEFG
Intron Amino Acid Position:
325

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.79
0.9
73.4
37.3
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
53.3
0.08
1.1
46.7
44
Minor 5ss
38.9
-1.2
2.8
48
47.7
Minor BPS
52.8
0.17
2
77.53
39.3

Associated Gene:

Gene:
RFX3
Ensembl Gene ID:
ENSAPLG00000011096
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011568
28833259 - 28893673
60415
ENSAPLT00000010315
28833259 - 28894070
60812
ENSAPLT00000039282
28833259 - 28894070
60812