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Intron Name: Anas_platyrhynchos_platyrhynchos_Z_28864078_28873720_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

28864078 - 28873720

Intron Length:

9643

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACA|GTAAGTATT

5'SS Class:

strong_major

3'SS Sequence:

CATCTATTATCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

CTTTTTTTAATG

Flanking Amino Acid:

THTTRTSPATIEMAIETLQK

Intron Amino Acid Position:

159

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.5

0.72

32.3

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

72.6

0.51

70.8

38.5

Minor 5ss

43.9

-0.7

2.9

66.1

38.6

Minor BPS

0.52

1.3

69.97

38.4

Associated Gene:

Gene:

RFX3

Ensembl Gene ID:

ENSAPLG00000011096

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011568

28833259 - 28893673

60415

ENSAPLT00000010315

28833259 - 28894070

60812