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Intron Name: Anas_platyrhynchos_platyrhynchos_Z_28873980_28885611_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

28873980 - 28885611

Intron Length:

11632

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAT|GTAAGTTGG

5'SS Class:

strong_major

3'SS Sequence:

TCTTTTCTTGAAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AAATAAT

U12 Branch Point Sequence:

CTTTTCTTGAAG

Flanking Amino Acid:

GSDTVYTNGAIRSTTYPYTE

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.1

0.76

71.7

40.8

Major BPS

71.2

0.53

70.3

31.9

Major PPT

0.7

0.9

Minor 5ss

-0.9

2.8

53.9

43.5

Minor BPS

63.4

0.28

1.5

66.96

Associated Gene:

Gene:

RFX3

Ensembl Gene ID:

ENSAPLG00000011096

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039282

28833259 - 28894070

60812

ENSAPLT00000011568

28833259 - 28893673

60415

ENSAPLT00000010315

28833259 - 28894070

60812