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Intron Name: Anas_platyrhynchos_platyrhynchos_Z_28885710_28888354_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

28885710 - 28888354

Intron Length:

2645

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGCACT

5'SS Class:

strong_major

3'SS Sequence:

TTCTTGTTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

AGCATCCCAATT

Flanking Amino Acid:

QIMVCSWRVQVQQVQTVQQV

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.2

0.78

0.9

77.1

37.8

Major BPS

96.5

1.15

0.6

34.2

Major PPT

89.5

0.89

0.7

87.9

29.5

Minor 5ss

48.1

-0.2

2.5

67.2

43.7

Minor BPS

43.8

-0.3

1.8

56.64

39.8

Associated Gene:

Gene:

RFX3

Ensembl Gene ID:

ENSAPLG00000011096

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011568

28833259 - 28893673

60415