Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_28885710_28893548_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

28885710 - 28893548

Intron Length:

7839

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGTGGT

5'SS Class:

strong_major

3'SS Sequence:

TTCTTGTTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

AGCATCCCAATT

Flanking Amino Acid:

VVQQVPVQQQVQQVQTVQQV

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.8

0.84

76.2

39.9

Major BPS

96.5

1.15

0.6

34.2

Major PPT

89.5

0.89

0.7

87.9

29.5

Minor 5ss

-1.9

3.5

49.2

47.1

Minor BPS

43.8

-0.3

1.8

56.64

39.8

Associated Gene:

Gene:

RFX3

Ensembl Gene ID:

ENSAPLG00000011096

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039282

28833259 - 28894070

60812

ENSAPLT00000010315

28833259 - 28894070

60812