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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_28888397_28893548_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28888397 - 28893548
Intron Length:
5152

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCTTCATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
TGTTTCTTCATA
Flanking Amino Acid:
VVQQVPVQQQLNSSQIMVCS
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
1
76.2
39.9
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
80.9
0.69
0.8
76.6
32.2
Minor 5ss
33
-1.9
3.5
49.2
47.1
Minor BPS
64.7
0.46
1.7
75.34
36.5

Associated Gene:

Gene:
RFX3
Ensembl Gene ID:
ENSAPLG00000011096
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011568
28833259 - 28893673
60415