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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_29027329_29028491_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29027329 - 29028491
Intron Length:
1163

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATGTC
5'SS Class:
strong_major
3'SS Sequence:
GTACTTTTCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TATTTTTGTACT
Flanking Amino Acid:
RTFSAHSGITVYDFPAGPTG
Intron Amino Acid Position:
886

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
82
29.3
Major BPS
83
0.82
0.8
82
24.9
Major PPT
76.8
0.6
0.9
68.9
41.7
Minor 5ss
36.6
-1.5
3.4
52
45.2
Minor BPS
55.8
0.26
1.8
77.34
39.2

Associated Gene:

Gene:
GLIS3
Ensembl Gene ID:
ENSAPLG00000014844
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028428
29027192 - 29200636
173445