About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_29057_30530_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29057 - 30530
Intron Length:
1474

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGGC
5'SS Class:
strong_major
3'SS Sequence:
TCTTGCCCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
CTCATCTGACCA
Flanking Amino Acid:
FWFNHLYNHEDIILAHYQPV
Intron Amino Acid Position:
1063

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.8
73.3
36.4
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
80.2
0.68
0.8
73.1
32
Minor 5ss
30.8
-2.2
3.3
41.8
45
Minor BPS
46.9
-0.2
1.8
56
43.3

Associated Gene:

Gene:
RUSC2
Ensembl Gene ID:
ENSAPLG00000023823
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038355
26121 - 58339
32219
ENSAPLT00000007727
26121 - 58339
32219
ENSAPLT00000001571
26121 - 58339
32219