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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_292068_306884_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
292068 - 306884
Intron Length:
14817

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TATTCTCTCATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
ATTGCTTTATCT
Flanking Amino Acid:
DLDYREHVAVSPAGSSRYGS
Intron Amino Acid Position:
256

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
0.9
77.5
32.9
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
78
0.63
0.8
73.2
31.4
Minor 5ss
27.5
-2.6
3.4
39.1
46.7
Minor BPS
65.2
0.56
1.7
81.9
40

Associated Gene:

Gene:
UNC13B
Ensembl Gene ID:
ENSAPLG00000003655
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003753
161360 - 353765
192406