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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_29226345_29227377_R

Intron Information:

Intron Rank:
152973
Intron Class:
major
Intron Phase:
Intron Coordinates:
29226345 - 29227377
Intron Length:
1033

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TATCTCACTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAC
U12 Branch Point Sequence:
TATGCTCTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
82.3
32.2
Major BPS
76.2
0.65
0.9
77.4
26.5
Major PPT
77.6
0.62
0.9
71.1
34
Minor 5ss
43.4
-0.7
3.1
60.6
44.5
Minor BPS
49.6
0.05
2
73.61
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029873
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037517
29226341 - 29233849
7509