Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_29406347_29406799_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

29406347 - 29406799

Intron Length:

453

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

AAG|GCATGGATG

5'SS Class:

strong_major

3'SS Sequence:

CTTTTTCTCACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CATAAAT

U12 Branch Point Sequence:

CCCTCCATAAAT

Flanking Amino Acid:

MDAGGKTYNQGIELVC

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.2

0.85

40.1

Major BPS

62.2

0.3

1.1

68.9

Major PPT

0.86

0.6

83.5

24.8

Minor 5ss

31.6

-2.1

4.1

47.3

48.3

Minor BPS

55.7

0.26

1.8

69.83

46.7

Associated Gene:

Gene:

CDC37L1

Ensembl Gene ID:

ENSAPLG00000006614

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006877

29406151 - 29413273

7123