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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_29407082_29408851_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29407082 - 29408851
Intron Length:
1770

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGACCC
5'SS Class:
strong_major
3'SS Sequence:
ATTTATTCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATATATTTATTC
Flanking Amino Acid:
DPVSKEVFNKSFINQKRKET
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
65.2
39.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
80.3
0.68
0.8
78
35.5
Minor 5ss
39.3
-1.2
3
51.9
44.8
Minor BPS
50.9
0.01
1.7
62.44
37.1

Associated Gene:

Gene:
CDC37L1
Ensembl Gene ID:
ENSAPLG00000006614
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006877
29406151 - 29413273
7123