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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_29411575_29412158_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29411575 - 29412158
Intron Length:
584

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTCAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
TCTGTTTTAAGT
Flanking Amino Acid:
CFRLFFQKAKTGEGYFEAFK
Intron Amino Acid Position:
211

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
0.9
77
33.6
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
93.6
0.98
0.6
92.4
17.8
Minor 5ss
35.2
-1.7
2.9
41.4
39.1
Minor BPS
58.8
0.35
1.7
74.22
43.6

Associated Gene:

Gene:
CDC37L1
Ensembl Gene ID:
ENSAPLG00000006614
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006877
29406151 - 29413273
7123