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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_29412315_29413150_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29412315 - 29413150
Intron Length:
836

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGCTCA
5'SS Class:
major
3'SS Sequence:
TCATCTGTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
AATTTTTCATCT
Flanking Amino Acid:
LVGQLTSLSQNTGGLQGSIN
Intron Amino Acid Position:
263

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
68.6
39.2
Major BPS
100
1.24
0.5
100
0
Major PPT
78.3
0.64
0.9
72.6
37.3
Minor 5ss
42.7
-0.8
3.1
56.5
47.9
Minor BPS
51.5
0.13
1.8
71.33
39.7

Associated Gene:

Gene:
CDC37L1
Ensembl Gene ID:
ENSAPLG00000006614
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006877
29406151 - 29413273
7123