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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_29414516_29418210_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
29414516 - 29418210
Intron Length:
3695

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAAATTA
5'SS Class:
major
3'SS Sequence:
CTCTGCACTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTATAC
U12 Branch Point Sequence:
TTTCTCTGCACT
Flanking Amino Acid:
DVSQKDAATPSPQPKIAVYQ
Intron Amino Acid Position:
227

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
0.9
76.3
28.1
Major BPS
69.3
0.48
1.1
67
39.5
Major PPT
73.2
0.52
0.9
65.5
34.9
Minor 5ss
35.4
-1.7
3.2
46.9
48.4
Minor BPS
57.5
0.32
1.9
82.07
39.1

Associated Gene:

Gene:
AK3
Ensembl Gene ID:
ENSAPLG00000006356
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006584
29413911 - 29431451
17541