About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_29460624_29461932_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29460624 - 29461932
Intron Length:
1309

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAAAG
5'SS Class:
strong_major
3'SS Sequence:
TTATTATTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TCTTTATTAACC
Flanking Amino Acid:
GIDGEGLEIKINRRGMPPKG
Intron Amino Acid Position:
160

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
74
36.4
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
83.3
0.75
0.8
82.2
34.2
Minor 5ss
32.2
-2
3
39.4
46.1
Minor BPS
71.5
0.65
1.5
79.01
36.3

Associated Gene:

Gene:
RCL1
Ensembl Gene ID:
ENSAPLG00000006031
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006275
29451014 - 29488687
37674
ENSAPLT00000047198
29451014 - 29489307
38294
ENSAPLT00000018626
29451014 - 29481929
30916