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Intron Name: Anas_platyrhynchos_platyrhynchos_Z_29462058_29464404_F

Intron Information:

Intron Rank:

Intron Class:

minor

Intron Phase:

Intron Coordinates:

29462058 - 29464404

Intron Length:

2347

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGC|GTATCCTTC

5'SS Class:

strong_minor

3'SS Sequence:

CTCAGAAATGTAG|G

3'SS Class:

minor_BPS

U2 Branch Point Sequence:

TTTTCAT

U12 Branch Point Sequence:

TTTTTCATGATC

Flanking Amino Acid:

PGKIKRIRGTAYSVRVSPQM

Intron Amino Acid Position:

201

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

47.3

-0.1

1.4

47.6

Major BPS

100

1.24

0.5

100

Major PPT

55.8

0.13

48.4

38.4

Minor 5ss

88.3

1.29

79.9

34.1

Minor BPS

0.45

1.5

78.05

31.2

Associated Gene:

Gene:

RCL1

Ensembl Gene ID:

ENSAPLG00000006031

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006275

29451014 - 29488687

37674

ENSAPLT00000047198

29451014 - 29489307

38294

ENSAPLT00000018626

29451014 - 29481929

30916