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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_29470625_29476169_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29470625 - 29476169
Intron Length:
5545

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTGGTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TAATTATTAAAA
Flanking Amino Acid:
AKLLLEEIYRGGCVDSTNQS
Intron Amino Acid Position:
296

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
1
71.1
40.4
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
86.3
0.82
0.8
80.6
37
Minor 5ss
32.6
-2
3.1
35.3
41.4
Minor BPS
58
0.25
1.7
68.11
37.2

Associated Gene:

Gene:
RCL1
Ensembl Gene ID:
ENSAPLG00000006031
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047198
29451014 - 29489307
38294
ENSAPLT00000018626
29451014 - 29481929
30916
ENSAPLT00000006275
29451014 - 29488687
37674