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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_29539181_29541021_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
29539181 - 29541021
Intron Length:
1841

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGCTCT
5'SS Class:
major
3'SS Sequence:
ACGTTTCTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTTAC
U12 Branch Point Sequence:
TACTCCTTACGT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
70.2
36.5
Major BPS
68.9
0.47
1
59.6
38.6
Major PPT
76.3
0.59
0.8
74
36.1
Minor 5ss
41.2
-1
3
53.8
44.4
Minor BPS
60
0.39
2
76.7
45.7

Associated Gene:

Gene:
JAK2
Ensembl Gene ID:
ENSAPLG00000004748
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005025
29537868 - 29584663
46796