Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_29552310_29552823_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

29552310 - 29552823

Intron Length:

514

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGATTT

5'SS Class:

strong_major

3'SS Sequence:

CTTTATTTTTCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

GCATCTTTATTT

Flanking Amino Acid:

DLVMSYLFAQWRDDFLDGWI

Intron Amino Acid Position:

155

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.1

0.85

0.9

83.3

29.2

Major BPS

90.4

0.7

90.2

19.3

Major PPT

90.1

0.9

0.7

88.2

28.6

Minor 5ss

2.8

73.4

43.4

Minor BPS

58.3

0.34

1.6

69.05

42.4

Associated Gene:

Gene:

JAK2

Ensembl Gene ID:

ENSAPLG00000004748

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030622

29531637 - 29584663

53027

ENSAPLT00000005025

29537868 - 29584663

46796