Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_29559592_29561031_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

29559592 - 29561031

Intron Length:

1440

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTT|GTAAGCAGT

5'SS Class:

major

3'SS Sequence:

CTTTCTACTATAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTAAA

U12 Branch Point Sequence:

TTTCTTTCTACT

Flanking Amino Acid:

NIQSNCHGPIFMDFAISKLK

Intron Amino Acid Position:

403

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.7

0.49

1.1

67.4

43.5

Major BPS

82.6

0.81

0.8

82.2

24.5

Major PPT

79.1

0.66

0.8

73.9

29.7

Minor 5ss

43.7

-0.7

63.7

41.8

Minor BPS

52.1

0.15

1.8

77.3

Associated Gene:

Gene:

JAK2

Ensembl Gene ID:

ENSAPLG00000004748

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030622

29531637 - 29584663

53027

ENSAPLT00000005025

29537868 - 29584663

46796