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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_29562918_29563633_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29562918 - 29563633
Intron Length:
716

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTTAT
U12 Branch Point Sequence:
TTTTCTTTACTC
Flanking Amino Acid:
FIKCCPPKPKDKSNLLVFRS
Intron Amino Acid Position:
503

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.4
26.8
Major BPS
75.1
0.62
1
65.6
41
Major PPT
87.5
0.84
0.7
80.8
31.2
Minor 5ss
29.7
-2.3
3.3
37.8
47
Minor BPS
72.7
0.69
1.5
81.67
33.1

Associated Gene:

Gene:
JAK2
Ensembl Gene ID:
ENSAPLG00000004748
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030622
29531637 - 29584663
53027
ENSAPLT00000005025
29537868 - 29584663
46796