Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_29564379_29565880_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

29564379 - 29565880

Intron Length:

1502

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTTGGTGTG

5'SS Class:

major

3'SS Sequence:

TTCTCTTTCTAAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GATTTAT

U12 Branch Point Sequence:

TTTCACTGATTT

Flanking Amino Acid:

LDKVHRNYSESFFEAASMMS

Intron Amino Acid Position:

591

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.7

0.56

1.2

68.2

42.9

Major BPS

70.9

0.52

1.2

63.7

43.9

Major PPT

76.7

0.6

82.3

26.7

Minor 5ss

31.3

-2.1

3.3

40.4

45.9

Minor BPS

50.3

0.09

1.9

75.75

40.6

Associated Gene:

Gene:

JAK2

Ensembl Gene ID:

ENSAPLG00000004748

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030622

29531637 - 29584663

53027

ENSAPLT00000005025

29537868 - 29584663

46796