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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_29565969_29568006_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29565969 - 29568006
Intron Length:
2038

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
CATTTTAAATCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTCTGTTAACT
Flanking Amino Acid:
NYGVCVCGEENILVQEYVKF
Intron Amino Acid Position:
620

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1
71.7
40.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
68.9
0.43
1
68.3
41
Minor 5ss
36.4
-1.5
2.7
38.9
40.3
Minor BPS
67.4
0.63
2
88.99
35.6

Associated Gene:

Gene:
JAK2
Ensembl Gene ID:
ENSAPLG00000004748
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030622
29531637 - 29584663
53027
ENSAPLT00000005025
29537868 - 29584663
46796