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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_29618730_29637313_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29618730 - 29637313
Intron Length:
18584

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACGCAC
5'SS Class:
major
3'SS Sequence:
CTCCTTTCTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTAAT
U12 Branch Point Sequence:
TTTTGTTTAACC
Flanking Amino Acid:
EFMLMSSRLQLERQLLMQNQ
Intron Amino Acid Position:
28

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.2
63.9
42.4
Major BPS
78.2
0.7
1
77.9
32.1
Major PPT
81.5
0.71
0.7
80.5
24.8
Minor 5ss
36.6
-1.5
3.3
50.1
46.5
Minor BPS
75.7
0.79
1.7
85.93
32.4

Associated Gene:

Gene:
PLGRKT
Ensembl Gene ID:
ENSAPLG00000018947
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022384
29612568 - 29637400
24833