Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_29637401_29638283_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

29637401 - 29638283

Intron Length:

883

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTTTGTGCT

5'SS Class:

major

3'SS Sequence:

TTCCGCGCTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTCTCAC

U12 Branch Point Sequence:

TAGGTCTCACCC

Flanking Amino Acid:

VKPFWLPSLRGRDGVHLLQV

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.1

0.61

1.1

72.6

36.5

Major BPS

67.3

0.43

1.2

71.3

36.7

Major PPT

72.4

0.5

0.9

65.3

36.2

Minor 5ss

37.8

-1.4

51.1

45.4

Minor BPS

-0.3

1.9

54.91

43.4

Associated Gene:

Gene:

PLGRKT

Ensembl Gene ID:

ENSAPLG00000018947

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035153

29612568 - 29638923

26356