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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_29644786_29645667_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
29644786 - 29645667
Intron Length:
882

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTTGCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GATTCAA
U12 Branch Point Sequence:
GCTGATTCAACT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
23.2
Major BPS
65.2
0.38
1.2
69.6
37.5
Major PPT
76.7
0.6
0.9
76.1
37.8
Minor 5ss
26.6
-2.7
3
30.8
43.1
Minor BPS
48.6
-0
1.8
65.65
44.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004669
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045347
29644660 - 29655462
10803