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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_29644786_29647763_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29644786 - 29647763
Intron Length:
2978

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTATCATTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TGTTCTTTGATT
Flanking Amino Acid:
MFFEIREGNVGSTYIMEKPL
Intron Amino Acid Position:
11

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
23.2
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
80.9
0.69
0.8
78.9
34.1
Minor 5ss
26.6
-2.7
3
30.8
43.1
Minor BPS
77.8
0.96
1
87.51
31.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004669
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004801
29644660 - 29655487
10828