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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_29670704_29672440_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29670704 - 29672440
Intron Length:
1737

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGGA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTACCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACAAAA
U12 Branch Point Sequence:
CTTTTCCTACCT
Flanking Amino Acid:
LLEMQLWVVSGLFTVEVPQQ
Intron Amino Acid Position:
19

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.8
71.2
34.5
Major BPS
51.5
0.04
0.9
57.3
24.9
Major PPT
75.9
0.58
0.7
74.8
28.8
Minor 5ss
24.3
-3
3.1
29.7
43.1
Minor BPS
56.8
0.29
2
79.84
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004593
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004712
29670649 - 29677530
6882