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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_29674153_29674731_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29674153 - 29674731
Intron Length:
579

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTTCATATC
5'SS Class:
major
3'SS Sequence:
TTTATTTTGACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTATTTTGACA
Flanking Amino Acid:
EETSAHFSTLALLSTLYSGQ
Intron Amino Acid Position:
235

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67
0.4
1.2
70.8
39.3
Major BPS
100
1.24
0.5
100
0
Major PPT
82.6
0.73
1
80
37.5
Minor 5ss
34.9
-1.7
3
46.2
42
Minor BPS
70.2
0.63
1.2
78.33
31.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004593
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024471
29672401 - 29675682
3282
ENSAPLT00000004712
29670649 - 29677530
6882