Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_29675286_29677447_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

29675286 - 29677447

Intron Length:

2162

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACA|GTAAGTCAT

5'SS Class:

major

3'SS Sequence:

TTCTTTTTCTAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

GATTTTAAAAGT

Flanking Amino Acid:

KLNPSLTDENRDDYSPQTEA

Intron Amino Acid Position:

295

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.6

0.63

39.5

Major BPS

90.4

0.7

90.2

19.3

Major PPT

79.9

0.67

0.9

86.1

25.4

Minor 5ss

38.1

-1.3

3.1

55.9

42.3

Minor BPS

43.6

-0.4

2.1

61.92

42.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000004593

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004712

29670649 - 29677530

6882