Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_29686701_29695592_R

Intron Information:

Intron Rank:

131586

Intron Class:

major

Intron Phase:

Intron Coordinates:

29686701 - 29695592

Intron Length:

8892

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGCTGTA

5'SS Class:

major

3'SS Sequence:

CCTGCTTTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTCAT

U12 Branch Point Sequence:

TTTTCTGTTACT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.57

1.2

72.4

39.5

Major BPS

100

1.24

0.5

100

Major PPT

82.7

0.74

0.8

79.8

32.2

Minor 5ss

40.4

-1.1

3.5

57.6

47.1

Minor BPS

60.2

0.4

2.3

87.77

37.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000018008

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020340

29686520 - 29696166

9647