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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_29724820_29726048_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
29724820 - 29726048
Intron Length:
1229

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TAATCTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TGGTTTGTAATC
Flanking Amino Acid:
KYRLMAFGCANGSVQVYTID
Intron Amino Acid Position:
269

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
90.7
21.1
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
80.9
0.7
0.9
77.9
35.9
Minor 5ss
47.8
-0.2
2.8
67.5
37.3
Minor BPS
49.7
-0
2
61.68
38.7

Associated Gene:

Gene:
RIC1
Ensembl Gene ID:
ENSAPLG00000004154
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004288
29696567 - 29743156
46590
ENSAPLT00000004287
29696567 - 29743156
46590