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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_29727509_29728163_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29727509 - 29728163
Intron Length:
655

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAATATA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTGCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTATTA
Flanking Amino Acid:
KKDPLKISSMTWGSEGYHLW
Intron Amino Acid Position:
364

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
0.9
82.2
30.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
84.9
0.79
0.8
81.7
35.4
Minor 5ss
38.8
-1.3
2.9
47.7
43.2
Minor BPS
67.9
0.56
1.5
78.16
33

Associated Gene:

Gene:
RIC1
Ensembl Gene ID:
ENSAPLG00000004154
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004288
29696567 - 29743156
46590
ENSAPLT00000004287
29696567 - 29743156
46590