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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_29730590_29731109_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29730590 - 29731109
Intron Length:
520

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGGC
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAA
U12 Branch Point Sequence:
TTACTCTTATCA
Flanking Amino Acid:
KWKLFGNITQEQNMIVTGGL
Intron Amino Acid Position:
533

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
0.9
69.4
35.7
Major BPS
79
0.72
1
80.3
31.7
Major PPT
90.7
0.92
0.7
88.7
28.3
Minor 5ss
25.3
-2.8
3.2
32.7
42.3
Minor BPS
63.8
0.43
1.6
73.52
37.9

Associated Gene:

Gene:
RIC1
Ensembl Gene ID:
ENSAPLG00000004154
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004288
29696567 - 29743156
46590
ENSAPLT00000004287
29696567 - 29743156
46590