Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_29731200_29731745_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

29731200 - 29731745

Intron Length:

546

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAAGTAT

5'SS Class:

major

3'SS Sequence:

GTTTTCCTTGTAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATTTAC

U12 Branch Point Sequence:

TTTACACTACCA

Flanking Amino Acid:

CYNLNDHQEELRIYLRTSNL

Intron Amino Acid Position:

563

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.66

0.9

74.1

Major BPS

78.8

0.71

0.9

69.7

37.1

Major PPT

0.74

0.7

30.8

Minor 5ss

32.3

-2

3.4

45.9

49.3

Minor BPS

47.9

-0.1

2.2

70.44

41.2

Associated Gene:

Gene:

RIC1

Ensembl Gene ID:

ENSAPLG00000004154

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004288

29696567 - 29743156

46590

ENSAPLT00000004287

29696567 - 29743156

46590