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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_29731907_29732953_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
29731907 - 29732953
Intron Length:
1047

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTATTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TATTAAATAATT
Flanking Amino Acid:
CLYSIERRPEGLNPTASVQV
Intron Amino Acid Position:
616

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
86.9
30.1
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
90.4
0.91
0.7
89.1
26
Minor 5ss
35.8
-1.6
2.9
43.1
43.9
Minor BPS
50.9
0.11
2
76.97
38.8

Associated Gene:

Gene:
RIC1
Ensembl Gene ID:
ENSAPLG00000004154
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004288
29696567 - 29743156
46590
ENSAPLT00000004287
29696567 - 29743156
46590