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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_29754531_29755063_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29754531 - 29755063
Intron Length:
533

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAGT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTACTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAGCAT
U12 Branch Point Sequence:
TCTTTTTCTACT
Flanking Amino Acid:
NPKPKRVFLQHTSRRFHDLD
Intron Amino Acid Position:
13

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.6
33.3
Major BPS
63.3
0.33
1.5
74
41.2
Major PPT
82.6
0.73
0.8
73.7
35.8
Minor 5ss
35.2
-1.7
3
49.5
46.3
Minor BPS
53.7
0.2
1.9
75.28
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028854
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028659
29750595 - 29755099
4505