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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_29759262_29760180_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29759262 - 29760180
Intron Length:
919

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTCTA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCTTCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
TTCTTCTTCACA
Flanking Amino Acid:
GKKVFQPKTRVINNLKKLFT
Intron Amino Acid Position:
171

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
87.1
30
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
87.5
0.84
0.7
83.3
25.2
Minor 5ss
37.8
-1.4
3
49.8
46.4
Minor BPS
68.4
0.57
1.7
78.35
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030581
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028878
29756258 - 29761147
4890