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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_29787740_29791775_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29787740 - 29791775
Intron Length:
4036

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTAAA
5'SS Class:
strong_major
3'SS Sequence:
GCTGTTGATCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ACGTATTTATCT
Flanking Amino Acid:
SVTIATFHLGAPVASSLCVK
Intron Amino Acid Position:
68

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.89
0.9
83.2
30.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
63.2
0.3
1
54.6
45
Minor 5ss
33.6
-1.9
3
41.3
45.3
Minor BPS
50.9
0.11
1.8
66.77
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003923
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004024
29787538 - 29795746
8209