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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_29791920_29792924_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29791920 - 29792924
Intron Length:
1005

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTATGACTT
5'SS Class:
major
3'SS Sequence:
TGGTGTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
CAGTTTCTAACT
Flanking Amino Acid:
WMYATTGFLQGLGISFSWTP
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
68.1
42.8
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
80
0.68
0.9
76.9
42.1
Minor 5ss
43.5
-0.7
3.1
57.3
46.8
Minor BPS
54.5
0.22
1.7
68.89
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003923
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045457
29790966 - 29795746
4781