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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_29803913_29804955_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29803913 - 29804955
Intron Length:
1043

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTACCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
ATTTTCTTACCA
Flanking Amino Acid:
LQEYRNFDSVVPDAPPAYEK
Intron Amino Acid Position:
92

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
74.9
36.2
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
82.1
0.72
0.8
77.3
30
Minor 5ss
40.7
-1
2.8
49.7
41.9
Minor BPS
72.4
0.7
1.5
81.19
34.3

Associated Gene:

Gene:
MLANA
Ensembl Gene ID:
ENSAPLG00000003877
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003969
29800872 - 29805024
4153