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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_29843150_29849852_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29843150 - 29849852
Intron Length:
6703

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATAAT
5'SS Class:
strong_major
3'SS Sequence:
ATTTGTTTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TTTATGTTCATT
Flanking Amino Acid:
VTKSAIPEFQLICTNLDELR
Intron Amino Acid Position:
632

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
89.4
23.3
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
83.4
0.75
0.8
81.7
35.4
Minor 5ss
36.8
-1.5
2.9
50.6
45.9
Minor BPS
47.8
-0
2.4
75.63
41.8

Associated Gene:

Gene:
KIAA2026
Ensembl Gene ID:
ENSAPLG00000003748
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003705
29816218 - 29874098
57881