Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_29894147_29895064_F

Intron Information:

Intron Rank:

128211

Intron Class:

major

Intron Phase:

Intron Coordinates:

29894147 - 29895064

Intron Length:

918

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGCAAG

5'SS Class:

strong_major

3'SS Sequence:

TTGTTCTTTCTAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ACACTAT

U12 Branch Point Sequence:

CAGCCAAGAACA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.6

0.93

0.9

77.9

38.6

Major BPS

46.3

-0.2

1.3

40.8

39.1

Major PPT

84.2

0.77

0.8

77.7

36.7

Minor 5ss

38.7

-1.3

2.8

47.8

47.9

Minor BPS

42.2

-0.5

1.9

49.68

40.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000019054

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026438

29893935 - 29909229

15295