About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_29936193_29942345_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29936193 - 29942345
Intron Length:
6153

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGCGC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCATTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTCTTCATTACA
Flanking Amino Acid:
RQRLFYRGKQVSLQAANSHL
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
63.9
42.4
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
86.3
0.82
0.7
80.8
29.7
Minor 5ss
25.7
-2.8
3.1
32.8
42.2
Minor BPS
55.2
0.16
1.9
71.81
40

Associated Gene:

Gene:
UHRF2
Ensembl Gene ID:
ENSAPLG00000013042
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041509
29935911 - 30020387
84477