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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_29996187_30000174_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
29996187 - 30000174
Intron Length:
3988

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAATATA
5'SS Class:
strong_major
3'SS Sequence:
ACCGTTTTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTTACTAAAACC
Flanking Amino Acid:
PLSKIPEDEDWYCPSCKNDS
Intron Amino Acid Position:
425

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
0.9
82.2
30.3
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
75.3
0.57
0.8
73
36.8
Minor 5ss
38.8
-1.3
2.9
47.7
43.2
Minor BPS
52.7
0.07
2
71.92
39.2

Associated Gene:

Gene:
UHRF2
Ensembl Gene ID:
ENSAPLG00000013042
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041509
29935911 - 30020387
84477
ENSAPLT00000013585
29935911 - 30020387
84477
ENSAPLT00000003674
29935911 - 30020387
84477