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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_30025761_30026723_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30025761 - 30026723
Intron Length:
963

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGACGA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGCTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAA
U12 Branch Point Sequence:
ATGTCTTAAACA
Flanking Amino Acid:
RMDPQINPLKMSPHTLNCVT
Intron Amino Acid Position:
1043

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.9
71.7
40.1
Major BPS
77.8
0.69
1
78.2
31.8
Major PPT
82.3
0.73
0.8
77.5
31.3
Minor 5ss
31.3
-2.1
3
39.6
45.7
Minor BPS
65.5
0.48
1.6
73.21
39.1

Associated Gene:

Gene:
GLDC
Ensembl Gene ID:
ENSAPLG00000012359
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038095
30023988 - 30065520
41533
ENSAPLT00000018482
30024169 - 30065520
41352
ENSAPLT00000012975
30023988 - 30065520
41533