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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_30030460_30031101_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30030460 - 30031101
Intron Length:
642

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTGAGTATC
5'SS Class:
major
3'SS Sequence:
GTGTTTGTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TAAGTTCTAACA
Flanking Amino Acid:
GGGPGMGPIGVKKHLAPYLP
Intron Amino Acid Position:
868

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.1
74.3
36.2
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
75.5
0.57
1
73.5
41.9
Minor 5ss
36.8
-1.5
2.9
46.6
41.8
Minor BPS
49.6
-0
1.7
61.48
38.6

Associated Gene:

Gene:
GLDC
Ensembl Gene ID:
ENSAPLG00000012359
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038095
30023988 - 30065520
41533
ENSAPLT00000018482
30024169 - 30065520
41352
ENSAPLT00000012975
30023988 - 30065520
41533