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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_30036725_30038156_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30036725 - 30038156
Intron Length:
1432

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTATT
5'SS Class:
strong_major
3'SS Sequence:
CTCATCACCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TCTTTCTCATCA
Flanking Amino Acid:
QNFLVPNVERRQHLGCQGAP
Intron Amino Acid Position:
768

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
92.8
22.7
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
68.7
0.42
0.9
61.6
33.5
Minor 5ss
41.7
-0.9
2.9
60.3
44.1
Minor BPS
57.5
0.23
1.8
70.93
41.6

Associated Gene:

Gene:
GLDC
Ensembl Gene ID:
ENSAPLG00000012359
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038095
30023988 - 30065520
41533
ENSAPLT00000018482
30024169 - 30065520
41352