About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_30039848_30039945_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30039848 - 30039945
Intron Length:
98

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAGGTATT
5'SS Class:
strong_major
3'SS Sequence:
GTTTGTATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
ATTTTGATAAAT
Flanking Amino Acid:
ISLVHSMIPLGSCTMKLNSS
Intron Amino Acid Position:
652

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
83.5
35
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
77.3
0.61
0.9
74.7
40
Minor 5ss
40.4
-1.1
3.2
56.3
42.5
Minor BPS
48.5
-0
2.3
76.33
39.9

Associated Gene:

Gene:
GLDC
Ensembl Gene ID:
ENSAPLG00000012359
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038095
30023988 - 30065520
41533
ENSAPLT00000018482
30024169 - 30065520
41352
ENSAPLT00000012975
30023988 - 30065520
41533